rs35852602 chr3:196962789 A>G
- Sequence
tatgacacagagtcttttgttcac[A/G]tgttttcctgttgaccctctctcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD51_HUMAN ARNT_HUMAN IKZF1_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | -2.75 | 2.65 | 1.00 | 3.98 | Concordant | |||
| IKZF1_HUMAN | -1.28 | 1.74 | 1.25 | n/a | No Hit | |||
| ELF1_HUMAN | n/a | 2.19 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Esophagus_Mucosa, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood