rs35869133 chr5:178839469 C>T
- Sequence
tgattgtaaagccagtgtggaact[C/T]tgcagccttggctcagaaacgcag
- ASB in cell types
- HCT-116 (colon carcinoma) WA09 (embryonic stem cells) esophagus squamous epithelium GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.13 | -0.70 | 1.32 | n/a | No Hit | |||
| RAD21_HUMAN | 2.92 | -2.00 | 1.67 | n/a | n/a | |||
| STAG1_HUMAN | 2.85 | -3.02 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis