rs35912888 chr1:42923331 G>C
- Sequence
atggatggctggaggatagggttg[G/C]ggttgagtgggggcagtggtgagg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- EGR2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR2_HUMAN | n/a | 2.76 | 2.00 | -1.75 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Pituitary, Thyroid