rs36057011 chr15:75758467 T>C
- Sequence
gccagcatttcgccctccagcacc[T/C]cctgcgggctgtggtccgcttccg
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) 2588 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN BCL3_HUMAN MYB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.59 | 1.76 | 1.33 | 3.09 | Concordant | |||
| JUN_HUMAN | 1.83 | -0.62 | 1.00 | n/a | No Hit | |||
| BCL3_HUMAN | 1.97 | -0.37 | 1.00 | n/a | n/a | |||
| MYB_HUMAN | 1.41 | -0.37 | 1.50 | n/a | No Hit | |||
| USF1_HUMAN | 2.18 | -2.38 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood