rs36068 chr5:149037949 C>T
- Sequence
gcatgctgctaatctatttctccc[C/T]gtgtgtgcccttcctctgaagggg
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts MOLT-4 (Adult T acute lymphoblastic leukemia) MV-4-11 (Childhood acute monocytic leukemia)
- ASB for transcription factors
- GATA1_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.83 | -0.78 | 1.83 | -0.52 | Weak Concordant | |||
| CDK9_HUMAN | 2.15 | -1.00 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid