rs36083203 chr1:234617411 C>T
- Sequence
gatgtcatttctgttctgacctct[C/T]gtggtgggtgggggtgatgggaat
- ASB in cell types
- BEAS-2B (bronchial epithelium) breast tumor PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN CTCF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.22 | 1.13 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | -1.40 | 1.75 | 1.50 | 0.32 | Weak Concordant | |||
| ESR1_HUMAN | 3.02 | 0.23 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid