rs3664 chr20:62841034 A>G

Sequence
tgaaaaatattcagtaacttgttt[A/G]catagcatttgtgtaaagactatg
ASB in cell types
LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.31 -0.08 3.6·10-231.00 1.74 -3.38 Concordant
ANDR_HUMAN 1.50 0.52 0.021.00 1.67 n/a No Hit
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP fasting blood glucose
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Coronary Artery_Tibial Brain_Amygdala Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Brain_Spinal_cord_cervical_c-1 Brain_Substantia_nigra Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Testis Thyroid

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