rs37024 chr16:56932159 T>G
- Sequence
ggcgcgcgccccagagacgtgaac[T/G]gtcgttgcagagattgcgggcggc
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) spleen Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN HTF4_HUMAN ZN449_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.32 | 1.66 | 1.38 | n/a | No Hit | |||
| JUN_HUMAN | 0.33 | 1.09 | 1.79 | n/a | No Hit | |||
| HTF4_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit | |||
| ZN449_HUMAN | -1.86 | 2.66 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Pancreas, Skin_Sun_Exposed_Lower_leg, Whole_Blood