rs37025 chr16:56932099 G>A
- Sequence
acagagcgttctgtccgcagagcc[G/A]ggcgcggggcttctataaaaggcg
- ASB in cell types
- primary B-CLL cells A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN HTF4_HUMAN ZN449_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.07 | 1.65 | 1.57 | n/a | No Hit | |||
| HTF4_HUMAN | 2.89 | -2.77 | 1.00 | n/a | No Hit | |||
| ZN449_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 0.24 | 1.23 | 2.67 | n/a | No Hit | |||
| BRD4_HUMAN | 0.40 | 2.12 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Thyroid