rs37037 chr16:58630698 A>G

Sequence
agagacgccttccagagacgtagg[A/G]gacgcaagttctcttcctggctta
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) 0.10 0.70 1.003.6·10-5 2.29
GM12878 (female B-cells lymphoblastoid cell line) 2.02 -1.68 0.031.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP coronary artery disease (cad),  docetaxel response in lymphoblastoid cell lines
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Spleen,  Thyroid

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