rs371973889 chr20:1466918 C>A
- Sequence
gcttgccggtcgacgaggcccagc[C/A]gatgagggcccagcagctgggagc
- ASB in cell types
- SEM (childhood B acute lymphoblastic leukemia) CD14+ monocytes neutrophils from periferal blood HuCCT1 (intrahepatic cholangiocarcinoma)
- ASB for transcription factors
- RUNX2_HUMAN STAT1_HUMAN CTCF_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX2_HUMAN | 3.12 | -4.53 | 1.33 | n/a | No Hit | |||
| STAT1_HUMAN | 2.78 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 2.15 | -1.82 | 1.75 | 3.20 | Discordant | |||
| SMC1A_HUMAN | 2.47 | n/a | 1.00 | n/a | n/a | |||
| ZHX2_HUMAN | 2.56 | -2.14 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Thyroid, Whole_Blood