rs3737897 chr1:63367765 C>G
- Sequence
ccgggggctcggacgcgccacgag[C/G]cggcgcagagctggcgacccgtct
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM18486 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SP3_HUMAN TAL1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.88 | 2.17 | 2.09 | 5.30 | Concordant | |||
| SP3_HUMAN | -2.32 | 3.11 | 2.00 | 4.42 | Concordant | |||
| TAL1_HUMAN | -1.86 | 2.40 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.49 | 2.06 | 1.75 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid