rs374104140 chr1:30111579 T>G
- Sequence
ggggaggggagtggcggggggagg[T/G]ggattaggtccagaaaagcgcaca
- ASB in cell types
- HCT-116 (colon carcinoma) epithelial cell of prostate GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.26 | 0.82 | 2.67 | n/a | No Hit | |||
| RAD21_HUMAN | 3.72 | -4.37 | 1.00 | n/a | n/a |
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