rs3745403 chr19:51367941 G>A
- Sequence
gccccgcagcgactcgccctcgtc[G/A]caccgaatccgcagtcccatcacc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- NFXL1_HUMAN CTCF_HUMAN ZN600_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFXL1_HUMAN | n/a | 2.40 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.25 | 0.63 | 1.13 | n/a | No Hit | |||
| ZN600_HUMAN | -1.44 | 1.71 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis