rs3746187 chr19:18169006 A>G

Sequence
gtccctggtggggtcatccgggac[A/G]ggggagcacgcggccctggaacgg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN REQU_HUMAN IKZF2_HUMAN SMCA5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -3.78 3.58 1.001.3·10-7 1.33 n/a No Hit
REQU_HUMAN n/a 3.98 1.003.9·10-7 1.00 n/a n/a
IKZF2_HUMAN -1.30 3.17 1.002.2·10-5 1.00 n/a n/a
SMCA5_HUMAN -2.24 2.67 1.000.02 1.00 n/a No Hit
MEF2B_HUMAN n/a 2.19 1.000.04 1.00 n/a No Hit
Items per page:
1 – 5 of 6

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Nerve_Tibial,  Pituitary,  Testis,  Whole_Blood

Download