rs3746341 chr20:63658261 G>C
- Sequence
aagagcaggcggaccccctccgcg[G/C]gggaacagtttccgccgggagcac
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) keratinocytes adult erythroblasts
- ASB for transcription factors
- GABP1_HUMAN SNAI2_HUMAN TYY1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 0.26 | n/a | 2.00 | n/a | n/a | |||
| SNAI2_HUMAN | n/a | 2.64 | 1.50 | n/a | No Hit | |||
| TYY1_HUMAN | 1.49 | 0.22 | 1.67 | n/a | No Hit | |||
| STAT1_HUMAN | -0.41 | 1.25 | 2.33 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood