rs3748643 chr1:45500031 G>T
- Sequence
cgcagcgccacctgggaaactgag[G/T]tcgcctcttgcgaacacaaccggc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) K562 (myelogenous leukemia) HEK293T (embryonic kidney)
- ASB for transcription factors
- ELF4_HUMAN ETS1_HUMAN ATF1_HUMAN ILF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF4_HUMAN | -1.14 | 1.81 | 1.50 | n/a | n/a | |||
| ETS1_HUMAN | -0.43 | 1.85 | 1.33 | n/a | No Hit | |||
| ATF1_HUMAN | -1.16 | 1.38 | 1.00 | n/a | No Hit | |||
| ILF3_HUMAN | 2.30 | -1.93 | 1.00 | n/a | n/a | |||
| RFOX2_HUMAN | 2.36 | -2.49 | 1.17 | n/a | n/a |
Items per page:
1 – 5 of 25
Motif analysis
Genetic associations
GRASP diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, height, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood