rs3750297 chr1:17233181 G>A
- Sequence
aaaagtcacacgcttgtggcctgc[G/A]atcttttggcctacctcattttat
- ASB in cell types
- HT29 (colon adenocarcinoma) HCT-116 (colon carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- PPARG_HUMAN SMCA4_HUMAN NOTC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PPARG_HUMAN | 2.35 | -1.27 | 2.00 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.54 | -0.22 | 2.00 | n/a | n/a | |||
| NOTC1_HUMAN | 2.34 | -1.38 | 2.00 | n/a | n/a |
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