rs3759937 chr16:1331916 C>A
- Sequence
gtagctgcagagcctgtcccttca[C/A]ttaaagccagtgtgatcaccatgg
- ASB in cell types
- keratinocytes GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.53 | n/a | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.02 | -0.86 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder versus schizophrenia, ldl cholesterol, methamphetamine-induced psychosis, schizophrenia, simpson-angus scale, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood