ADASTRA v5.1.3
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rs376047
chr19:11265999
C
>
T
Sequence
actttggcctcctctgctctactg[C/T]gtggagaacacgttgcggacatga
ASB in cell types
MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
ASB for transcription factors
JUN_HUMAN
CDN1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN
-0.07
1.72
1.00
2.2·10
-5
2.33
n/a
No Hit
CDN1B_HUMAN
-0.55
2.06
1.00
5.2·10
-4
2.25
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
height
,
irritible bowel syndrome
,
ldl cholesterol
,
total cholesterol
,
transmission distortion
GTEx eQTL
Adipose_Subcutaneous
,
Brain_Caudate_basal_ganglia
,
Brain_Cortex
,
Brain_Hippocampus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Lung
,
Muscle_Skeletal
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)