rs3788530 chr22:37762734 A>G
- Sequence
gagaagaagagctgagtcatctgt[A/G]tcgccctcaggcacgggaggaggc
- ASB in cell types
- TMD8 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, late onset alzheimers disease, ldl cholesterol, neuroblastoma (brain cancer), obsessive-compulsive disorder (ocd), paternal transmission distortion, tetrology of fallot, total cholesterol, transmission distortion, variant creutzfeldt-jakob disease, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood