rs37940 chr16:11202115 G>A
- Sequence
cagcctgcagctcctgcagctccc[G/A]gttcctccccctggcccggcagag
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) macrophages form periferal blood
- ASB for transcription factors
- TF65_HUMAN SPI1_HUMAN EP300_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | -0.56 | 1.50 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | -0.07 | 1.41 | 2.19 | 2.83 | Concordant | |||
| EP300_HUMAN | 0.42 | 1.45 | 1.10 | n/a | n/a | |||
| SMCA4_HUMAN | 1.41 | -4.42 | 2.00 | n/a | n/a |
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Motif analysis
