rs3794629 chr16:88663468 G>A
- Sequence
tgcgggcttgtgcggggctgtgcg[G/A]cagctgtgtggggcccgtgaggag
- ASB in cell types
- K562 (myelogenous leukemia) WA01 (H1-hESC) derived cardiomyocyte
- ASB for transcription factors
- MNT_HUMAN PHF8_HUMAN NRF1_HUMAN ETS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.63 | -0.56 | 2.33 | n/a | n/a | |||
| PHF8_HUMAN | 2.86 | n/a | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 0.25 | 0.36 | 2.33 | n/a | No Hit | |||
| ETS2_HUMAN | -2.00 | 2.38 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood