rs3796818 chr4:10096352 C>T
- Sequence
tgctctgcagtgcctccaccctag[C/T]gaagaaacatggcctgaagccaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- STAT1_HUMAN CDK8_HUMAN CDN1B_HUMAN BACH1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.52 | -1.55 | 2.00 | n/a | No Hit | |||
| CDK8_HUMAN | -0.80 | 1.62 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | 1.21 | -0.14 | 1.79 | n/a | n/a | |||
| BACH1_HUMAN | 2.33 | -1.99 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, diabetic retinopathy in type 2 diabetes mellitus, gout, microalbuminuria, prop taste detection threshold, refractive error, serum creatinine, serum urate, total cholesterol, uric acid, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood