rs3805476 chr5:172768089 G>A

Sequence
tgtggttgccaaagaaataaaagc[G/A]ttgaaatttcaatagaaatgccat
ASB in cell types
A549 (lung carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
JUN_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 0.57 1.25 1.003.0·10-5 2.00 n/a No Hit
ANDR_HUMAN 2.66 -1.91 1.3·10-31.00 3.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Spleen,  Testis,  Whole_Blood

Download