rs3808914 chr10:26697393 C>G
- Sequence
gctatgactgcaggcgtggccagt[C/G]tccctgcacagcttccgggaagag
- ASB in cell types
- CD14+ monocytes BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN RBBP5_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.54 | 0.04 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.72 | 1.35 | 1.07 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.62 | -4.84 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | -2.15 | 2.42 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Thyroid, Whole_Blood