rs3809335 chr13:25287439 A>G
- Sequence
gccgtctcctagaaacacttcccc[A/G]aaccccgcggcctcccgggggact
- ASB in cell types
- CD14+ monocytes germinal center B-cells
- ASB for transcription factors
- STAT1_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.77 | n/a | 3.00 | 2.67 | Discordant | |||
| TCF21_HUMAN | 2.19 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP cystatin c in serum, lung function, forced expiratory volume in 1 second (fev1) percent predicted (in asthmatic participants), lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc) (in asthmatic participants), schizophrenia, sporadic creutzfeldt-jakob disease, transmission distortion, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood