rs3813879 chr11:3854752 G>T
- Sequence
tgagggcaggtaggaaaaagggct[G/T]tgagagctaagggagggcatccca
- ASB in cell types
- K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- NRF1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.78 | -0.98 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.32 | 0.91 | 1.29 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Whole_Blood