rs3823861 chr7:120806074 A>C

Sequence
cagtgaactaaaactgacatcact[A/C]atcattagccagcagggggagctg
ASB in cell types
glioblastoma cells K562 (myelogenous leukemia) neutrophils from periferal blood adrenal gland
ASB for transcription factors
CTCF_HUMAN KDM6A_HUMAN PKNX1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.94 0.86 1.005.5·10-13 1.33 n/a No Hit
KDM6A_HUMAN n/a 3.39 1.001.1·10-3 2.00 n/a n/a
PKNX1_HUMAN -0.46 2.02 1.002.2·10-3 1.25 n/a No Hit
STAT1_HUMAN 1.68 n/a 0.051.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP age at death with kuru exposure,  asthma,  hdl cholesterol,  microalbuminuria,  years of education
GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Pancreas,  Thyroid,  Whole_Blood

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