rs3824754 chr10:102854593 C>T
- Sequence
gtgttgcattctggggtgtgcagt[C/T]tctttggttagggacagtgtgtga
- ASB in cell types
- pancreas breast tumor GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN GABPA_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.50 | n/a | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.75 | n/a | 2.00 | n/a | No Hit | |||
| GABPA_HUMAN | -0.69 | 2.12 | 1.11 | n/a | No Hit | |||
| TYY1_HUMAN | 2.28 | -0.03 | 1.61 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.03 | 0.07 | 1.25 | n/a | n/a |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, birth weight, body mass index (bmi), coronary artery disease (cad), diastolic blood pressure (dbp), major depressive disorder, microalbuminuria, obesity with early age of onset (age >2), parkinsons disease, parkinsons disease (pd), systolic blood pressure (sbp), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood