rs3825408 chr13:49691525 G>T

Sequence
ggccgggaaggggcggagccggat[G/T]gccaaggaggagcggagctgattg
ASB in cell types
22RV1 (prostate carcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ANDR_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.60 -1.05 2.1·10-31.00 2.00 n/a No Hit
STAT1_HUMAN 2.00 0.27 0.021.00 2.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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