rs3825877 chr15:84631400 G>A
- Sequence
cgctgctgtctgtcttcgggcggc[G/A]gcctctgggaaatgtagttccgga
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- PKNX1_HUMAN GABPA_HUMAN ZN143_HUMAN SP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -0.16 | 0.38 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 0.22 | 1.68 | 1.58 | n/a | No Hit | |||
| ZN143_HUMAN | 0.99 | 0.41 | 1.70 | -5.43 | Concordant | |||
| SP1_HUMAN | 0.99 | 2.70 | 1.36 | -2.91 | Discordant | |||
| ZBT40_HUMAN | -0.41 | 0.60 | 1.25 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood