rs3827554 chr3:196082245 A>C
- Sequence
tgcgcgcgcagcgggcggggccct[A/C]tgcggagggcgctgcgggcgaggc
- ASB in cell types
- keratinocytes HEK293 (embryonic kidney) liver fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- SNAI2_HUMAN GABPA_HUMAN MED26_HUMAN KLF11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -4.33 | 3.55 | 1.50 | n/a | No Hit | |||
| GABPA_HUMAN | 1.88 | -0.35 | 1.67 | n/a | No Hit | |||
| MED26_HUMAN | 2.16 | -1.93 | 1.00 | n/a | n/a | |||
| KLF11_HUMAN | 1.91 | -1.53 | 1.00 | n/a | n/a | |||
| KMT2A_HUMAN | 1.83 | 0.56 | 1.08 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid