rs3828055 chr1:151539950 T>C
- Sequence
cttacgtatagggagaggagcatg[T/C]atggaaggaagcttttgcaggttc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) keratinocytes
- ASB for transcription factors
- GCR_HUMAN SNAI2_HUMAN CREB1_HUMAN NFIB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -1.06 | 2.67 | 1.17 | n/a | No Hit | |||
| SNAI2_HUMAN | n/a | 3.84 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | -0.66 | 3.45 | 1.83 | n/a | No Hit | |||
| NFIB_HUMAN | n/a | 2.49 | 3.00 | n/a | n/a | |||
| CLOCK_HUMAN | n/a | 2.82 | 3.00 | n/a | No Hit |
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Motif analysis
