rs3829076 chr9:35658065 G>T
- Sequence
gtattttatagccctaaagaaatt[G/T]tgttttatgattagggtgagaaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) monocytes from periferal blood monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- TBP_HUMAN PO2F1_HUMAN SRBP2_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 2.73 | n/a | 2.25 | n/a | No Hit | |||
| PO2F1_HUMAN | 1.69 | -0.54 | 1.50 | n/a | No Hit | |||
| SRBP2_HUMAN | -2.06 | 1.88 | 4.00 | n/a | No Hit | |||
| HTF4_HUMAN | 2.27 | -1.94 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood