rs3856688 chr3:139677620 T>G
- Sequence
ccagcggggactcccaggactcag[T/G]taggggccaggagtcacgtgggcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) LNCaP C4-2B (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZFX_HUMAN BHE40_HUMAN CTCF_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 0.25 | 1.64 | 1.20 | n/a | No Hit | |||
| BHE40_HUMAN | 2.28 | -1.76 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.88 | 1.05 | 1.27 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.15 | -1.95 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Pancreas, Prostate, Stomach