rs3901332 chr10:71889110 A>G
- Sequence
gctgggacgcagcgcggggcgagc[A/G]gtggcgcactcgtggcctgacgca
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma) SH-SY5Y (neuroblastoma) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN CDN1B_HUMAN STAT1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.33 | 1.65 | 1.35 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.09 | 1.57 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.31 | -3.67 | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.07 | -0.87 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.42 | 0.81 | 1.33 | n/a | n/a |
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