rs3909326 chr5:123835648 C>T
- Sequence
ggctggagaaaaacaatagtgtta[C/T]cctttttgaatttcattgcgtgcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN IKZF2_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.79 | -3.59 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.74 | n/a | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | 2.67 | -2.34 | 1.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hdl cholesterol change with statins, total cholesterol