rs3925081 chr3:111837294 C>T

Sequence
agaatactaggcaggaagttctta[C/T]gcaaccttgtacaatattccttat
ASB in cell types
SUM159PT (Triple negative breast cancer) BEAS-2B (bronchial epithelium)
ASB for transcription factors
CEBPB_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 2.40 0.29 7.9·10-91.00 1.25 0.83 Weak Discordant
GCR_HUMAN 1.91 -0.55 0.011.00 1.30 n/a No Hit
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Motif analysis

CEBPB_HUMAN Weak Discordant
CEBPB_HUMAN pic

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence,  hdl cholesterol,  ldl cholesterol change with statins,  microalbuminuria,  paclitaxel-induced cytotoxicity in lymphoblastoid cell lines,  urinary albumin-to-creatinine ratio
GTEx eQTL Spleen,  Thyroid

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