rs3930290 chr1:165616469 A>G
- Sequence
atgctaagactccactcattcaca[A/G]aggagaagccaaatcaaacagctt
- ASB in cell types
- LNCaP (prostate carcinoma) CWR22 (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.18 | 1.15 | 1.61 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, college completion, hdl cholesterol, height, ldl cholesterol, total cholesterol
GTEx eQTL Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Vagina, Whole_Blood