rs39454 chr7:25096164 G>A

Sequence
acaagatgttccagggccacctac[G/A]ggttaactggttaatatttaactt
ASB in cell types
MS-1 (Small cell lung carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN n/a 2.92 1.004.4·10-4 1.00 1.82 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP arthritis including non-rheumatoid,  barnes akathisia rating scale,  diabetic retinopathy in type 2 diabetes mellitus,  hdl cholesterol,  ldl cholesterol,  maternal transmission distortion,  transmission distortion,  variant creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts

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