rs3979627 chr10:96641124 T>C
- Sequence
tgtgtgtgtgtgtgtgtgtgtgtg[T/C]gcgtgtgcatgtatacacccacgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Peyer's patch pancreas adrenal gland
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN IKZF1_HUMAN SKIL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.42 | 1.48 | 1.37 | n/a | No Hit | |||
| CREB1_HUMAN | 2.94 | -3.02 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.24 | 2.75 | 1.25 | n/a | No Hit | |||
| SKIL_HUMAN | n/a | 3.00 | 1.00 | n/a | n/a | |||
| BHE40_HUMAN | -1.49 | 1.49 | 1.00 | n/a | No Hit |
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