rs398225 chr3:8971202 G>A
- Sequence
gagtatcaggctggatgtgggctc[G/A]cgctttgagagggaaatgcagata
- ASB in cell types
- esophageal epithelial cells OCI-LY7 (diffuse large B-cell lymphoma) HeLa Kyoto (cervical adenocarcinoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.62 | 1.24 | n/a | No Hit | |||
| STAG1_HUMAN | 0.69 | 0.02 | 1.00 | n/a | n/a | |||
| FOXP1_HUMAN | 2.07 | -1.49 | 1.00 | n/a | No Hit |
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