rs39897 chr5:132101203 C>T

Sequence
ttgtctatcctgagatgacggtta[C/T]accctgagaagacggtctaaggct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN n/a 2.30 1.000.03 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi) fasting insulin hdl cholesterol change with statins height homa-ir irritible bowel syndrome triglycerides change with statins waist hip ratio weight in controls
GTEx eQTL Adipose_Subcutaneous Artery_Tibial Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Mucosa Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Testis Thyroid

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