rs4075047 chr15:63048408 T>C

Sequence
gtttgtctgcgcagccctggaggc[T/C]gcgacttccggactgctcctggcc
ASB in cell types
A549 (lung carcinoma) thymus-derived CD34- cells 22RV1 (prostate carcinoma) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
BC11B_HUMAN JUN_HUMAN STAT1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BC11B_HUMAN n/a 2.74 1.001.4·10-3 2.00 n/a n/a
JUN_HUMAN 1.13 0.48 3.9·10-31.00 1.00 n/a No Hit
STAT1_HUMAN 1.49 -0.31 9.7·10-31.00 3.00 n/a No Hit
CTCF_HUMAN 0.64 0.71 0.021.00 1.17 n/a No Hit
ANDR_HUMAN 2.46 -0.11 0.041.00 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  hdl cholesterol,  height,  ldl cholesterol,  refractive error,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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