rs412000 chr17:58631697 G>C

Sequence
gtcaccaacagcaaacagcagtta[G/C]aataacgcaacaccaaacactgct
ASB in cell types
A549 (lung carcinoma) MV-4-11 (Childhood acute monocytic leukemia) THP-1 (acute monocytic leukemia) HT1080 (fibrosarcoma)
ASB for transcription factors
JUN_HUMAN BRD4_HUMAN RAD21_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 2.91 0.20 4.7·10-170.87 2.45 n/a No Hit
BRD4_HUMAN 2.36 0.50 1.1·10-101.00 1.56 n/a n/a
RAD21_HUMAN 1.25 -0.31 1.6·10-71.00 1.00 n/a n/a
STAT1_HUMAN 2.39 n/a 9.0·10-71.00 3.00 n/a No Hit
REST_HUMAN 2.91 n/a 1.2·10-61.00 3.00 n/a No Hit
Items per page:
1 – 5 of 17

Motif analysis

No data available

Genetic associations

EMBL-EBI chronotype,  primary tooth development (time to first tooth eruption)
GRASP chronic kidney disease,  college completion,  serum creatinine,  systolic blood pressure (sbp),  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina,  Whole_Blood

Download