rs41270409 chr1:44048283 T>A
- Sequence
gtaactctcccaacagaactggat[T/A]cgtgcctggggtgattcaggatgt
- ASB in cell types
- K562 (myelogenous leukemia) HKC8 (kidney proximal tubule cell line)
- ASB for transcription factors
- EPAS1_HUMAN ILF3_HUMAN TR150_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EPAS1_HUMAN | n/a | 2.92 | 1.00 | 9.00 | Concordant | |||
| ILF3_HUMAN | 1.97 | -1.50 | 1.00 | n/a | n/a | |||
| TR150_HUMAN | 2.18 | -1.96 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg