rs41303970 chr1:93909753 G>A
- Sequence
cgcctccgcctggtgaggtctccc[G/A]gcgttcaggtcgcggctccgccca
- ASB in cell types
- CD14+ monocytes HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- STAT1_HUMAN ZBT24_HUMAN ANDR_HUMAN BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.01 | -4.70 | 2.00 | n/a | No Hit | |||
| ZBT24_HUMAN | -0.76 | 1.22 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.49 | -1.62 | 2.00 | n/a | No Hit | |||
| BC11B_HUMAN | 1.82 | -0.91 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid