rs4148970 chr21:42893183 A>G
- Sequence
ggcgtggccccaagggaggcactt[A/G]gccctactggggatgcgcgcgcag
- ASB in cell types
- 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HCASMC (Human coronary artery smooth muscle cells) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN TCF21_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.31 | -0.77 | 1.83 | n/a | No Hit | |||
| TCF21_HUMAN | 1.49 | n/a | 3.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.39 | -0.12 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood