rs42200 chr7:108526395 T>C
- Sequence
cgtgatgcgcgaggcgtggcttgc[T/C]ggtggggcgtgctgtgccttggtt
- ASB in cell types
- K562 (myelogenous leukemia) upper lobe of left lung GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts
- ASB for transcription factors
- HCFC1_HUMAN RBM25_HUMAN EP300_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | -0.45 | 2.34 | 1.33 | n/a | n/a | |||
| RBM25_HUMAN | 1.25 | -2.19 | 3.58 | n/a | n/a | |||
| EP300_HUMAN | 3.15 | 0.04 | 1.40 | n/a | n/a | |||
| STAT1_HUMAN | 1.01 | -0.48 | 1.75 | n/a | No Hit | |||
| ILF3_HUMAN | -2.92 | 1.46 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid